FastQCFastQC Report
Wed 15 May 2024
EGAF00000640070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000640070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76370030
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC1255180.1643550487016962TruSeq Adapter, Index 8 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG1242380.16267899855479956TruSeq Adapter, Index 8 (100% over 49bp)
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT773640.10130151840977408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)