FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000654111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000654111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5159745
Sequences flagged as poor quality0
Sequence length100
%GC85

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN486645894.31586250870924No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNN1520592.947025482848474No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNCNN418920.8119005881104588No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNTNN255860.4958772187385229No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNN225970.43794799936818585No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNN96440.1869084615615694No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNCNN83370.1615777523889262No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNANN64290.12459918077346846No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNN57890.11219546702404867No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNTNN57210.11087757243817283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)