FastQCFastQC Report
Fri 10 May 2024
EGAF00000656891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000656891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11595275
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length93
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT279200.24078773465916076No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT246990.21300917830754337No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT208870.1801337182602396No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)