FastQCFastQC Report
Thu 5 Jan 2023
EGAF00000692059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000692059
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences92771781
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG10048631.0831558790490396Illumina Paired End PCR Primer 2 (100% over 31bp)
CTTTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG3664640.39501666999364815Illumina Paired End PCR Primer 2 (100% over 31bp)
CGTTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG3397330.3662029513047723Illumina Paired End PCR Primer 2 (100% over 31bp)
CTGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG2308520.2488385988838567Illumina Paired End PCR Primer 2 (100% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)