FastQCFastQC Report
Sat 13 May 2023
EGAF00000692399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000692399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34037247
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT756380.22222126248929594No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA595110.1748408148285318No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT581630.170880447528556No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT452900.13306011499696202No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC446300.13112106275810145No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG408340.11996857442671553No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA402850.11835563551893606No Hit
CAAGGATTCTGTGCAGCATTTGGTGACTCTGTCACTTACTGGCGTTTTCT372430.10941836747255147No Hit
CTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTTGT365490.10737942466381022No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATA346970.10193832656324996No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA345880.1016180891480442No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA344860.10131841743840211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)