FastQCFastQC Report
Fri 17 Mar 2023
EGAF00000692411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000692411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81690636
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT1794390.21965675478398772No Hit
CTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTTGT1069360.1309036203366075No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC1046090.1280550686372426No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA1028970.1259593572022135No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT853860.10452360782207644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)