FastQCFastQC Report
Tue 26 Sep 2023
EGAF00000692461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000692461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41171164
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT813010.1974707346141586No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA496430.12057711071758864No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT458970.11147850957043624No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC447250.10863185699583329No Hit
CTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTTGT426410.10357006180345057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)