FastQCFastQC Report
Fri 30 Dec 2022
EGAF00000694435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191028901
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10126080.5300810477886799No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5583740.29229817953043663No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC4025940.21075030945186665No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA3698610.19361520590017947No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT2305730.12070058446287141No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC2060440.10786011902984251No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG2008730.1051531987822094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)