FastQCFastQC Report
Thu 19 Jan 2023
EGAF00000694439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences258247395
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65067792.5195913399242613No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19549680.7570136380272102No Hit
CTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCA3443790.13335236159884595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)