FastQCFastQC Report
Sat 17 Dec 2022
EGAF00000694442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193155848
Sequences flagged as poor quality0
Sequence length101
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31821361.647444813578722No Hit
GTGCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTCCCGGAG9692050.5017735730165416No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9549820.4944100889971501No Hit
GCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTCCCGGAGGT6077820.31465886551879085No Hit
GGTGCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTCCCGGA4391510.22735578785064792No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC4390040.22727968350199781No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTA3194150.1653664661501732No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC3099600.16047145515366432No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT2993250.1549655385013246No Hit
GCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCGTACGGCCAGG2885580.14939128325019702No Hit
CTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTCCCGGAGGTT2727020.1411823679291346No Hit
CGGTGGAATAATTCTGACGAATCTGGGAGCTCATGGTTGGTTGGCAAGAA2435300.12607953759701854No Hit
CCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCC2144020.11099948679783177No Hit
GGCAGGGACTCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTTG2076710.10751473597630863No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)