FastQCFastQC Report
Tue 24 Jan 2023
EGAF00000694443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239917251
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67867172.8287740759417086No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19801820.82536040728476No Hit
CCAAGGCAGTGCATGCATGTTGGGGTTTCCTTTACCTTTTCTATAAGTTG3382700.14099444645604078No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2542960.10599321180118056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)