FastQCFastQC Report
Mon 26 Dec 2022
EGAF00000694444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239917251
Sequences flagged as poor quality0
Sequence length76
%GC29

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT195540358.150324713415461No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA46632321.943683491105023No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC13795370.5750053379863043No Hit
CCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCC10018330.41757439109703703No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7865780.32785387325065674No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC6548300.2729399396127626No Hit
GGTGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGG6105530.25448482652045723No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5004370.20858733497242346No Hit
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4942060.20599018950913203No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT3915430.16319918570590825No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA3756720.15658398820183214No Hit
GTGCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTCCCGGAG3488680.1454118028386379No Hit
CCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCC3288620.13707309442287666No Hit
GCCTTGGGTAACCTCTGGGACTCAGAAGTGAAAGGGGGCTATTCCTAGTT3031170.12634231124964No Hit
CTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCT2767510.11535268883186729No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2744270.11438402151415115No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTA2632330.10971824614645989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)