FastQCFastQC Report
Fri 30 Dec 2022
EGAF00000694450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences237862692
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74254723.1217472305408873No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA71284142.996860894856096No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGGGCTGTGCCTA8798820.36991173041966585No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC5705910.23988251171394295No Hit
CCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGGGCTGTGCCTAG2943360.12374197799796195No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC2751830.11568985353953701No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2497130.10498199524286893No Hit
TGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGGGCTGTGCCT2493860.10484452097262904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)