FastQCFastQC Report
Fri 30 Dec 2022
EGAF00000694452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences236486569
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT68602192.9008915935517674No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA56351032.382842722877848No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC10326100.4366463619335608No Hit
GCTGGTTGTAGTTGGTGCTCACCACTCGGACGAGGTAACTCGTTAATCCA4573940.19341225251570207No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC3878820.16401861705727566No Hit
CCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCC2985490.12624353309468497No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTA2546630.107686030998234No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2478740.10481525485703165No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)