FastQCFastQC Report
Sat 21 Jan 2023
EGAF00000694459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249518053
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53858282.158492315584075No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23500930.9418528927043207No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG2937080.11771012015711746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)