FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000694476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences188127998
Sequences flagged as poor quality0
Sequence length101
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT75681944.022896156052221No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20243601.0760546125622408No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC9085680.4829520377929074No Hit
CCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCC4024260.21391074389682285No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC3933870.20910603641250677No Hit
GTGGCAGGTTAGTTGTTTGTAGGGCTCATGGTAGGGGTAAAAGGAGGGCA3114370.1655452688121414No Hit
GCCTTGGGTAACCTCTGGGACTCAGAAGTGAAAGGGGGCTATTCCTAGTT2826400.1502381373345609No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2793730.14850155371344567No Hit
GTGCTGGAGTTTAAGTTGAGTAGTAGGAATGCGGTAGTAGTTAGGATAAT2161040.11487072753519655No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTA2138620.11367898572970515No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1955630.10395209755009457No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)