FastQCFastQC Report
Mon 23 Jan 2023
EGAF00000694483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161888966
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11978150.739899098496929No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5129940.3168801510536549No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC3095330.1912008011713411No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA2515970.15541330963840982No Hit
CAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCG1646290.10169253907026622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)