FastQCFastQC Report
Thu 22 Dec 2022
EGAF00000694485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205610141
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23217771.129213271635274No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6372080.3099107840211052No Hit
GCTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA3909420.19013750883036454No Hit
CCAAGGCAGTGCATGCATGTTGGGGTTTCCTTTACCTTTTCTATAAGTTG3199810.15562510605933585No Hit
CGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGC2476480.12044542102619346No Hit
TCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGAC2191360.10657840072197605No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)