FastQCFastQC Report
Fri 20 Jan 2023
EGAF00000694493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228169348
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38768091.6990928159202174No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10933480.4791826814529005No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA2978900.13055653733121067No Hit
CGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGC2419800.10605280775926133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)