FastQCFastQC Report
Fri 20 Jan 2023
EGAF00000694502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000694502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239177211
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT76939893.216857060851002No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA59796262.5000818326291125No Hit
GCCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTC15677910.6554934700697718No Hit
GCCTTGTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGC9052400.378480874584661No Hit
GCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTA5970070.24960864687062514No Hit
CCTGGTTCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCC5906330.2469436772552716No Hit
GCCTTGGGTAACCTCTGGGACTCAGAAGTGAAAGGGGGCTATTCCTAGTT4719590.1973260738457227No Hit
CGGTGGAGGAATGGTGCCTGTTGGCGTTGAGTGGATGGAGGCAGAAGTGG3071420.12841608057717507No Hit
CGGTGGAGGAATGGTGCCTGTTGGCATTGAGTGGATGGAGGCAGAAGTGG2664400.11139857300200728No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2601310.10876077988884986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)