FastQCFastQC Report
Sat 25 May 2024
EGAF00000696219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000696219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109516170
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2224130.2030869048835437No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1701110.15532957370587375No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1222570.11163374321801064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)