FastQCFastQC Report
Sun 22 Jan 2023
EGAF00000697671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000697671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115921574
Sequences flagged as poor quality0
Sequence length101
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1564240.1349395066012475No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1171490.10105884173035815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)