FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000709914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11146879
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCC628267156.36260158560975No Hit
CCAGGCTAAGTCACAAGCTTGATCTCCTTTGAAAAGAGCTCAGCTTAAAG569200.5106362058832791No Hit
CCAGGCTAAGTCACAAGCTTCTTTTCCTGCTCTTATTGCATGCTCAGGTA550350.49372564284585846No Hit
CCAGGCTAAGTCACAAGCTTCACAGAGGACACACCGAGGAGGCTGAATCT532560.4777660186317623No Hit
CCAGGCTAAGTCACAAGCTTTGCCTAAGACAGACACACGCATGCTCAGGT388260.34831274296599074No Hit
CCAGGCTAAGTCACAAGCTTAAGGGGCATAGCTGGACCCCTGCATATATG332920.29866655949167475No Hit
CCAGGCTAAGTCACAAGCTTTATTGAAGTATAATTGATATACAAAGACCT319990.2870669000713114No Hit
CCAGGCTAAGTCACAAGCTTCTGTTATAAGGTCTCATCACACCATATGCC314470.2821148412932445No Hit
CCAGGCTAAGTCACAAGCTTGCATAATTCTAGCCCCAGTGATTCTTCTTT303160.27196850347079216No Hit
CCAGGCTAAGTCACAAGCTTGGTATGGAGGAGGAACAGAAAAAATGCCAG283560.25438510636026457No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGCCTCATCACACCATATGCC282700.25361358995643535No Hit
CCAGGCTAAGTCACAAGCTTCTGATTTGTACGTCAGGGGTGAAGTGCAGG265630.23829988645252181No Hit
CCAGGCTAAGTCACAAGCTTGTGAGATTCACCTTTCCTCGCTTTATATCT249500.22382946832023562No Hit
CCAGGCTAAGTCACAAGCTTTGGAAAAGTGTTTAGGGCCAATCAGTAGAA242560.21760351036375294No Hit
CCAGGCTAAGTCACAAGCTTGCCAGTAGAAATAGTGACTCTCACATACTG239070.21447258914356207No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACGCCATATGCC231700.20786087298516476No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCACCACACCATATGCC229300.2057078039512226No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCCCATCACACCATATGCC226930.20358164828020472No Hit
CCAGGCTAAGTCACAAGCTTGTAAGAAAAAGACAATAAACAATGTTGGCC218640.19614458899212955No Hit
CCAGGCTAAGTCACAAGCTTGAAACCATCATTCTCAGCAAACTAACACAG215790.19358781951432324No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAGGGTCTCATCACACCATATGCC207200.18588162659700533No Hit
CCAGGCTAAGTCACAAGCTTTTGCTATAAGGTCTCATCACACCATATGCC206290.18506525458830225No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATACGCC196670.17643503621058415No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCGCACCATATGCC196010.17584294222625005No Hit
CCAGGCTAAGTCACAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTAC194690.17465875425758187No Hit
CCAGGCTAAGTCACAAGCTTTCGTTATAAGGTCTCATCACACCATATGCC186950.16771510662311845No Hit
CCAGGCTAAGTCACAAGCTTCCCTCCACTTTACTCATCAGCAATGCAGCT186740.16752671308264852No Hit
CCAGGCTAAGTCACAAGCTTAAGCTATGTGCGCTATAGAAGAGGTAGGGT175230.15720095284070096No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCGTCACACCATATGCC174660.1566895989451397No Hit
CCAGGCTAAGTCACAAGCTTAAATGACTTGACGAAGCTCATAGAAGATTA167920.1506430634081522No Hit
CCAGGCTAAGTCACAAGCTTCTGCTAGAAGCCAGTATCACAAATCTAGAA166220.14911797284244316No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCGTATGCC161530.14491051710528122No Hit
CCAGGCTAAGTCACAAGCTTTTTCCTCTAGGTACAGTGTTAGACAGTACA157560.14134898207830193No Hit
CCAGGCTAAGTCACAAGCTTTTGTTGTAAGGTCTCATCACACCATATGCC154060.13820908973713628No Hit
CCAGGCTAAGTCACAAGCTTCCCTAAACAGGGCTTGAGCTCTGGAAGGAG152480.13679165262312437No Hit
CCAGGCTAAGTCACAAGCTTTGTTCCAATTATCTACTGCTACATAACAGC149490.13410928745167144No Hit
CCAGGCTAAGTCACAAGCTTCCACACATGCTCAGGTAGTCGGTCATCGTA148090.1328533305152052No Hit
CCAGGCTAAGTCACAAGCTTATTGTACTTAAATCCACAAAAATTAGGTAC146840.13173194039336034No Hit
CCAGGCTAAGTCACAAGCTTGCTTTTGTATATGTAAGGAACCACACAGAG145310.13035935888422223No Hit
CCAGGCTAAGTCACAAGCTTGAAAAATTTCATCTGAAAATGAATGTTTTG139700.12532656001738243No Hit
CCAGGCTAAGTCACAAGCTTTGGATTTGAGTTTGTGTTTCCAAACACACT139110.12479726387987165No Hit
CCAGGCTAAGTCACAAGCTTAAATCCTTCTTCCAAAGGCACCCAGTAGCT138170.12395397850824433No Hit
CCAGGCTAAGTCACAAGCTTCATTCATTCACAAGTCCTCTCTGGATCCAT135450.1215138336031099No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCACATGCC133960.1201771365778708No Hit
CCAGGCTAAGTCACAAGCTTGGCAAAGTGTGACATTTGATTAAGCAGGAT132480.11884941067360649No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATGAGGTCTCATCACACCATATGCC130650.1172076955352256No Hit
CCAGGCTAAGTCACAAGCTTTCCACTGGTAGCCACAGCTGCTACTGCCCT128530.1153058178885767No Hit
CCAGGCTAAGTCACAAGCTTCTTTACCTACAAAAAGAAATCAAGATATTC125890.11293744195124034No Hit
CCAGGCTAAGTCACAAGCTTTTGTTACAAGGTCTCATCACACCATATGCC125320.11242608805567908No Hit
CCAGGCTAAGTCACAAGCTTCCTTTCTCGATGTGAAAAGAACAAACCTAT124640.11181605182939548No Hit
CCAGGCTAAGTCACAAGCTTTGCTGATCCTGACATACTGACATATATGTT124470.11166354277282457No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATGTGCC123380.11068569058657585No Hit
CCAGGCTAAGTCACAAGCTTTTGTCATAAGGTCTCATCACACCATATGCC122390.10979754961007471No Hit
CCAGGCTAAGTCACAAGCTTGGCTCTGTCATTTACTGGCCTCAAAATGTC122060.10950150261790767No Hit
CCAGGCTAAGTCACAAGCTTTCATTTTAATAAAAGTGTCTCCTATTTTTT120900.10846085258483563No Hit
CCAGGCTAAGTCACAAGCTTTTGTTTTAAGGTCTCATCACACCATATGCC119990.10764448057613257No Hit
CCAGGCTAAGTCACAAGCTTATCAAGAACAAACTAAAAGAAGATTGTAAG113440.10176839633766546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)