FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000709925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3265673
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGT75761723.199414025837857No Hit
CTTTCGCAGTGGAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA368371.1280063864324443No Hit
CTTTCGCAGTGGAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC239860.7344887256011242No Hit
CTTTCGCAGTGGAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT209680.6420728591013246No Hit
CTTTCGCAGTGGAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG180770.5535459306550288No Hit
CTTTCGCAGTGGAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT118100.36164061741637943No Hit
CTTTCGCAGTGGAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC112600.344798759704355No Hit
CTTTCGCAGTGGAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC109310.3347242666366167No Hit
CTTTCGCAGTGGAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG96470.29540618426890874No Hit
CTTTCGCAGTGGAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC83220.25483261796266804No Hit
CTTTCGCAGTGGAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA80780.24736095745042444No Hit
CTTTCGCAGTGGAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC77820.23829697584540768No Hit
CTTTCGCAGTGGAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTA73270.224364166283642No Hit
CTTTCGCAGTGGAAGCTTGCTCCAAATCATAGACACTGGTAGGTTAAACA68510.20978830397287174No Hit
CTTTCGCAGTGGAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAG66720.2043070448265947No Hit
CTTTCGCAGTGGAAGCTTGTTGTTTGTTTGTTTGATTCAGATGGGGGAAG65200.19965256778618068No Hit
CTTTCGCAGTGGAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG63180.19346701277194625No Hit
CTTTCGCAGTGGAAGCTTTTGTAGATGCCTTAAAGTTTTGTATGTAGACA63020.19297706782032373No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA61970.18976180407530086No Hit
CTTTCGCAGTGGAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG57700.17668639817887463No Hit
CTTTCGCAGTGGAAGCTTATCCACCAAGATCATCTGAGGTCAGGAGTTCA57700.17668639817887463No Hit
CTTTCGCAGTGGAAGCTTCCCTATTTTTAGGATCATCTGAGGTCAGGAGT57360.17564526515667675No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGCCAGGAGT56980.17448164589657322No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGTTCAGGAGT56260.17227689361427184No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGC53280.16315166889030225No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCACCTGAGGTCAGGAGT50440.15445514599900234No Hit
CTTTCGCAGTGGAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC49510.1516073409676964No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGTTTGAAA44730.13697023553797336No Hit
CTTTCGCAGTGGAAGCTTATCCACCATGATCATCTGAGGTCAGGAGTTCA40600.12432353147421679No Hit
CTTTCGCAGTGGAAGCTTGAGGAGCAAGGTAATAAAGTGGCACCTTAAAA40310.12343550624940097No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGGGT39780.12181256359715133No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCCATCTGCCTCAGCCTC39690.12153696956186368No Hit
CTTTCGCAGTGGAAGCTTTCTGGAAAATTGATGAATATTTGAAAATTAAT37440.11464711867967185No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGGGGTCAGGAGT37060.11348349941956834No Hit
CTTTCGCAGTGGAAGCTTCTACAGTTACCTTTATTTTGCATGTCCTCTGC36930.11308541914637504No Hit
CTTTCGCAGTGGAAGCTTAAGAAAAATTAATGGAGGTAAATCAAGAAATA36650.11222801548103561No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGA35900.109931398520305No Hit
CTTTCGCAGTGGAAGCTTCCTGGCTACAATAACTGTTAGGCTCTGAAATA33260.10184730681853328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)