FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000709926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3922052
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC197323650.31131662711255No Hit
CGAGGTTCTCGCAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA384560.9805071426895922No Hit
CGAGGTTCTCGCAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC320090.816128903951299No Hit
CGAGGTTCTCGCAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT232570.5929804092347577No Hit
CGAGGTTCTCGCAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC176670.4504529771660345No Hit
CGAGGTTCTCGCAAGCTTGTGCCACCATGCCCAGCCAATTTTGTGTGTGT155610.3967565957820039No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGAATCCC151000.38500254458635425No Hit
CGAGGTTCTCGCAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG94270.240358873365269No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAGGACAAGGTATCCC91130.23235286018645343No Hit
CGAGGTTCTCGCAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG85790.21873753841101548No Hit
CGAGGTTCTCGCAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC85480.21794713583603684No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGGCAAGGTATCCC83420.2126947832410177No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGCATCCC83120.2119298775232965No Hit
CGAGGTTCTCGCAAGCTTCAGGAGTACAAAGCTAAAAGACAAGGTATCCC80220.20453578891865787No Hit
CGAGGTTCTCGCAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT79210.20196060633566304No Hit
CGAGGTTCTCGCAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG76060.1939290962995901No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACGAAGCTAAAAGACAAGGTATCCC74260.18933966199326271No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAGGGTATCCC74180.18913568713520373No Hit
CGAGGTTCTCGCAAGCTTCAGGGATACAAAGCTAAAAGACAAGGTATCCC74140.18903369970617423No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACGAGGTATCCC73630.18773335998604812No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAGAGCTAAAAGACAAGGTATCCC69820.17801905737098847No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAGAGACAAGGTATCCC69220.176489245935546No Hit
CGAGGTTCTCGCAAGCTTCGGGAATACAAAGCTAAAAGACAAGGTATCCC69040.17603030250491325No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAGGCTAAAAGACAAGGTATCCC67370.1717723273429317No Hit
CGAGGTTCTCGCAAGCTTAAGGAATACAAAGCTAAAAGACAAGGTATCCC64830.16529612559955859No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTACCCC63870.16284842730285065No Hit
CGAGGTTCTCGCAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG61790.15754508099331677No Hit
CGAGGTTCTCGCAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA60390.15397552097728434No Hit
CGAGGTTCTCGCAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAG60390.15397552097728434No Hit
CGAGGTTCTCGCAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA54200.13819296633496955No Hit
CGAGGTTCTCGCAAGCTTATCCACCAAGATCAATCAATGTGAGGAATGAC52130.13291511688269303No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAGAAGACAAGGTATCCC51280.13074788401581622No Hit
CGAGGTTCTCGCAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC47140.12019218511126319No Hit
CGAGGTTCTCGCAAGCTTCAGGAATGCAAAGCTAAAAGACAAGGTATCCC44440.11330803365177208No Hit
CGAGGTTCTCGCAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTA44340.11305306507919835No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTGAAAGACAAGGTATCCC44180.11264511536308035No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTGTCCC44130.11251763107679347No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCCAAAAGACAAGGTATCCC43560.11106431021312313No Hit
CGAGGTTCTCGCAAGCTTATCCACCATGATCAATCAATGTGAGGAATGAC42470.10828515277206932No Hit
CGAGGTTCTCGCAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC42200.10759673762612021No Hit
CGAGGTTCTCGCAAGCTTTTTGAAAGATGGGATACCTTGTCTTTTAGCTT40230.10257385674641743No Hit
CGAGGTTCTCGCAAGCTTGAGGAGCAAGGTAATAAAGTGGCACCTTAAAA40140.10234438503110106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)