FastQCFastQC Report
Sun 11 Sep 2022
EGAF00000709931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3263393
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGT76012323.29241375464126No Hit
CTTTCGCAGTGGAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA365241.1192032341798859No Hit
CTTTCGCAGTGGAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC244890.7504152886275113No Hit
CTTTCGCAGTGGAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT215100.6591299301064873No Hit
CTTTCGCAGTGGAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG178500.5469767202417852No Hit
CTTTCGCAGTGGAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT119360.36575429315439484No Hit
CTTTCGCAGTGGAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC115210.35303746744569225No Hit
CTTTCGCAGTGGAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC110640.33903363768936196No Hit
CTTTCGCAGTGGAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG97590.2990445833523575No Hit
CTTTCGCAGTGGAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC83240.2550719450584101No Hit
CTTTCGCAGTGGAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA78490.24051654213881074No Hit
CTTTCGCAGTGGAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC77410.2372071031591966No Hit
CTTTCGCAGTGGAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTA71800.2200164062373119No Hit
CTTTCGCAGTGGAAGCTTGCTCCAAATCATAGACACTGGTAGGTTAAACA70370.21563446388467464No Hit
CTTTCGCAGTGGAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG67350.20638029192316096No Hit
CTTTCGCAGTGGAAGCTTGTTGTTTGTTTGTTTGATTCAGATGGGGGAAG66750.2045417147122642No Hit
CTTTCGCAGTGGAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAG65900.2019370636634938No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA64760.19844376696278995No Hit
CTTTCGCAGTGGAAGCTTTTGTAGATGCCTTAAAGTTTTGTATGTAGACA63640.195011756169116No Hit
CTTTCGCAGTGGAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG59210.18143692776199496No Hit
CTTTCGCAGTGGAAGCTTATCCACCAAGATCATCTGAGGTCAGGAGTTCA58770.18008863780733733No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGCCAGGAGT52890.16207058114054912No Hit
CTTTCGCAGTGGAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC51240.15701449381058302No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCACCTGAGGTCAGGAGT51150.1567387072289485No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGC49990.15318412462121478No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGTTTGAAA47710.1461975312198071No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCCATCTGCCTCAGCCTC41010.12566675236479333No Hit
CTTTCGCAGTGGAAGCTTATCCACCATGATCATCTGAGGTCAGGAGTTCA40900.12532967987612892No Hit
CTTTCGCAGTGGAAGCTTGAGGAGCAAGGTAATAAAGTGGCACCTTAAAA40870.12523775101558407No Hit
CTTTCGCAGTGGAAGCTTCTACAGTTACCTTTATTTTGCATGTCCTCTGC38510.11800601398605684No Hit
CTTTCGCAGTGGAAGCTTAAGAAAAATTAATGGAGGTAAATCAAGAAATA38190.11702543947357856No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGGGGTCAGGAGT38170.11696415356654867No Hit
CTTTCGCAGTGGAAGCTTTCTGGAAAATTGATGAATATTTGAAAATTAAT36840.11288864074906087No Hit
CTTTCGCAGTGGAAGCTTGTAATAAAATTTGCAGGTGTGGCTGGTTTATA33340.10216360701882979No Hit
CTTTCGCAGTGGAAGCTTCCTGGCTACAATAACTGTTAGGCTCTGAAATA32760.10038631571496293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)