FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000709932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4169466
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC210668050.52637436064954No Hit
CGAGGTTCTCGCAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA410900.9854979030887887No Hit
CGAGGTTCTCGCAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC346480.8309937051891058No Hit
CGAGGTTCTCGCAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT248930.5970308907663475No Hit
CGAGGTTCTCGCAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC189220.45382310348615384No Hit
CGAGGTTCTCGCAAGCTTGTGCCACCATGCCCAGCCAATTTTGTGTGTGT170260.40834965436820925No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGAATCCC137110.32884307007180297No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAGGCTAAAAGACAAGGTATCCC103880.249144614682072No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACGAGGTATCCC102200.24511532172225414No Hit
CGAGGTTCTCGCAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG100640.24137383540242321No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAGGACAAGGTATCCC97530.23391484664942705No Hit
CGAGGTTCTCGCAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC92610.2221147744099604No Hit
CGAGGTTCTCGCAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG90890.21798954590348021No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGGCAAGGTATCCC87020.20870778176389973No Hit
CGAGGTTCTCGCAAGCTTCAGGAGTACAAAGCTAAAAGACAAGGTATCCC86200.20674110305732196No Hit
CGAGGTTCTCGCAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT85250.2044626338240916No Hit
CGAGGTTCTCGCAAGCTTCAGGGATACAAAGCTAAAAGACAAGGTATCCC80870.19395769146456646No Hit
CGAGGTTCTCGCAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG80250.19247069049130033No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAGGGTATCCC79430.19050401178472254No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACGAAGCTAAAAGACAAGGTATCCC78540.1883694458714857No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGCATCCC78000.18707431599154425No Hit
CGAGGTTCTCGCAAGCTTCGGGAATACAAAGCTAAAAGACAAGGTATCCC75170.18028687606518437No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAGAGCTAAAAGACAAGGTATCCC73600.1765214058586879No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAGAGACAAGGTATCCC73410.17606571201204183No Hit
CGAGGTTCTCGCAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG71310.1710290958122695No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTACCCC69260.16611239904582506No Hit
CGAGGTTCTCGCAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAG64770.15534363393297845No Hit
CGAGGTTCTCGCAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA62140.14903587173993024No Hit
CGAGGTTCTCGCAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA60010.14392730388016114No Hit
CGAGGTTCTCGCAAGCTTATCCACCAAGATCAATCAATGTGAGGAATGAC54970.13183942500070753No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAGAAGACAAGGTATCCC53660.1286975358475162No Hit
CGAGGTTCTCGCAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC50930.12214993478781215No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTGAAAGACAAGGTATCCC47890.11485883324147506No Hit
CGAGGTTCTCGCAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTA47200.11320394506154985No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTGTCCC46870.11241247680158561No Hit
CGAGGTTCTCGCAAGCTTATCCACCATGATCAATCAATGTGAGGAATGAC46700.11200475072827072No Hit
CGAGGTTCTCGCAAGCTTCAGGAATGCAAAGCTAAAAGACAAGGTATCCC46620.11181287963494607No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCCAAAAGACAAGGTATCCC46470.11145312133496231No Hit
CGAGGTTCTCGCAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC45140.10826326440843982No Hit
CGAGGTTCTCGCAAGCTTGAGGAGCAAGGTAATAAAGTGGCACCTTAAAA43730.10488153638859268No Hit
CGAGGTTCTCGCAAGCTTTTTGAAAGATGGGATACCTTGTCTTTTAGCTT42550.10205143776205394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)