FastQCFastQC Report
Sun 11 Sep 2022
EGAF00000709939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2243156
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGT50757022.627494476532174No Hit
CTTTCGCAGTGGAAGCTTAATGATACGGCGAAACCTGTCTCTGCTTCGTA350841.56404637038173No Hit
CTTTCGCAGTGGAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA332271.4812612230268425No Hit
CTTTCGCAGTGGAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG237391.0582857367031093No Hit
CTTTCGCAGTGGAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC231661.0327413697486933No Hit
CTTTCGCAGTGGAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT213460.9516056841343179No Hit
CTTTCGCAGTGGAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC145680.6494421252913306No Hit
CTTTCGCAGTGGAAGCTTATCCACCAAGATCATCTGAGGTCAGGAGTTCA115300.5140079423811809No Hit
CTTTCGCAGTGGAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT98370.4385339227409953No Hit
CTTTCGCAGTGGAAGCTTTTTGATGTGCTGCTGGATTCGGTTTGCCAGTA93140.4152185581386226No Hit
CTTTCGCAGTGGAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG91090.4060796484952451No Hit
CTTTCGCAGTGGAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC69920.31170368890973255No Hit
CTTTCGCAGTGGAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC69680.3106337677807518No Hit
CTTTCGCAGTGGAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG69480.30974216683993444No Hit
CTTTCGCAGTGGAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA68440.3051058419476844No Hit
CTTTCGCAGTGGAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC60970.2718045468081578No Hit
CTTTCGCAGTGGAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC52020.23190540470658305No Hit
CTTTCGCAGTGGAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG51840.23110296385984744No Hit
CTTTCGCAGTGGAAGCTTTACAGAACCATCTCCACCCCCACTCCTACCCA49000.2184422305002416No Hit
CTTTCGCAGTGGAAGCTTTTGTAGATGCCTTAAAGTTTTGTATGTAGACA47930.213672165466869No Hit
CTTTCGCAGTGGAAGCTTGAGGAGCAAGGTAATAAAGTGGCACCTTAAAA46710.20823339972788338No Hit
CTTTCGCAGTGGAAGCTTGTTGTTTGTTTGTTTGATTCAGATGGGGGAAG46520.20738637883410696No Hit
CTTTCGCAGTGGAAGCTTATCCACCATGATCATCTGAGGTCAGGAGTTCA44020.19624136707389056No Hit
CTTTCGCAGTGGAAGCTTGCTCCAAATCATAGACACTGGTAGGTTAAACA41480.18491803512551067No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGCCAGGAGT39010.17390676350641684No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCCATCTGCCTCAGCCTC38540.17181150129549616No Hit
CTTTCGCAGTGGAAGCTTTCTGGAAAATTGATGAATATTTGAAAATTAAT37820.16860173790855384No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA34540.15397948247914992No Hit
CTTTCGCAGTGGAAGCTTAACATGTCCACAAACAATCTCTTTTTTCTAGC34260.15273124116200568No Hit
CTTTCGCAGTGGAAGCTTGTAATAAAATTTGCAGGTGTGGCTGGTTTATA31740.14149706930770753No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGC30490.13592456342759934No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCACCTGAGGTCAGGAGT28190.12567115260820025No Hit
CTTTCGCAGTGGAAGCTTTGCCTTCTTGGACTCTGGCCCCTCCTTAAAGG28090.12522535213779157No Hit
CTTTCGCAGTGGAAGCTTAAATCTTATCACTCATTTGGCACATAGCATAT27600.12304092983278916No Hit
CTTTCGCAGTGGAAGCTTTTGCTGACACTTAATGAAATCTTTTTAATTAC26520.11822628475237568No Hit
CTTTCGCAGTGGAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAG26430.11782506432900788No Hit
CTTTCGCAGTGGAAGCTTATGATACGGCGAAACCTGTCTCTGCTTCGTAT26110.11639850282370016No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGTTTGAAA25400.11323331948379872No Hit
CTTTCGCAGTGGAAGCTTGAGATTCCTTTTAGATATCAAAGAAAAGATGG23970.10685837275695495No Hit
CTTTCGCAGTGGAAGCTTGCGAGAACCTCGCACAGGGTTGGTATTTAGTA23810.10614509200430108No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGGGGTCAGGAGT23580.10511975092236117No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGA22690.10115212673572414No Hit
CTTTCGCAGTGGAAGCTTTTGAAATGGTTTCAGCTCTGTTCAATTGGGCA22470.10017136570082509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)