FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000709941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1237947
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTGCGTGCAGATTCAAGCTTTTGAAATGGTTTCAGCTCTGTTCAATTG1190179.614062637576568No Hit
AAGTGCGTGCAGATTCAAGCTTATTGAAGTTTAGGGAAAGAAGGTTGCTG126261.0199144228307029No Hit
AAGTGCGTGCAGATTCAAGCTTTTCTGGAATATTATTTAAATTAAAATCT77600.6268442833174603No Hit
AAGTGCGTGCAGATTCAAGCTTCAGTGTGTCCAGAGTTTTTATTGGGGCT73870.5967137526889277No Hit
AAGTGCGTGCAGATTCAAGCTTAGGGAACACTGTATGTGTAATTCCAATG71630.5786192785313102No Hit
AAGTGCGTGCAGATTCAAGCTTGGATGAACGTCCGTGGTTGGCAGTACTC67110.542107214606118No Hit
AAGTGCGTGCAGATTCAAGCTTGCCAGAAATATATAAACACCTACCCCAG56420.4557545678449885No Hit
AAGTGCGTGCAGATTCAAGCTTCATGTCAATAAACGCATCTTGGTGTCTG56060.4528465273553714No Hit
AAGTGCGTGCAGATTCAAGCTTAGGTGTCCAATTTGGGGCTGCCTGATTA49060.3963012956128171No Hit
AAGTGCGTGCAGATTCAAGCTTAAATCTTATCACTCATTTGGCACATAGC46230.37344086620832717No Hit
AAGTGCGTGCAGATTCAAGCTTATCCACCATGTCAATAAACGCATCTTGG40130.3241657356898155No Hit
AAGTGCGTGCAGATTCAAGCTTGTGCCACCATGTCAATAAACGCATCTTG32700.26414701114021844No Hit
AAGTGCGTGCAGATTCAAGCTTCTACAGTTACCTTTATTTTGCATGTCAA31910.25776547784355874No Hit
AAGTGCGTGCAGATTCAAGCTTATTTTTGTTAACAAGCAGTCTGTGTGTG31530.25469587954896294No Hit
AAGTGCGTGCAGATTCAAGCTTAGGACAAAGGATTGACAATTGGTTGCAG30690.24791045173985637No Hit
AAGTGCGTGCAGATTCAAGCTTAGCGTTCCAATAACGGAACACTAGGCAT27500.22214198184574946No Hit
AAGTGCGTGCAGATTCAAGCTTCTTCTGTTCTCTTTAACTCATCTACGTG26550.2144679861092599No Hit
AAGTGCGTGCAGATTCAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCA25010.20202803512589795No Hit
AAGTGCGTGCAGATTCAAGCTTCTAGAATAATTTATATGTGATAGAGGAT24720.19968544695370644No Hit
AAGTGCGTGCAGATTCAAGCTTCTCTACTTTTACTTCAAGGCACTCTTAA24720.19968544695370644No Hit
AAGTGCGTGCAGATTCAAGCTTTTTAAAGTAAACTAAATACTTAAATTAT23950.19346547146202542No Hit
AAGTGCGTGCAGATTCAAGCTTTGTTATTGATTCCAAGTTTAATTCTGTT23910.193142355852068No Hit
AAGTGCGTGCAGATTCAAGCTTTAATATTTAATACTGCTATCTTTTAGTA23470.189588084142536No Hit
AAGTGCGTGCAGATTCAAGCTTTGATCCTTGGTGATTGAGAGGATAGTGA23010.18587225462802529No Hit
AAGTGCGTGCAGATTCAAGCTTTCACTTCACAACTTAGGCATGTCAATAA21850.1765019019392591No Hit
AAGTGCGTGCAGATTCAAGCTTTCAGAAGCCTCTAATGAAACATATTTCT21000.1696356952276632No Hit
AAGTGCGTGCAGATTCAAGCTTGCAAAATACTTATTAAATTAAAAAACAG20880.16866634839779088No Hit
AAGTGCGTGCAGATTCAAGCTTATGGAGGCCAGATATGGCAAAGTTGTGT19870.16050767924636516No Hit
AAGTGCGTGCAGATTCAAGCTTATCCACCAAGATCAAGTTGGCTTCATCC17780.1436248886260882No Hit
AAGTGCGTGCAGATTCAAGCTTTGATCCTTGGTGATTGAGAAGATAGTGA17660.14265554179621584No Hit
AAGTGCGTGCAGATTCAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGC17500.141363079356386No Hit
AAGTGCGTGCAGATTCAAGCTTCTATGTGGATCCCAGCTAGAGCTCATAC17100.13813192325681148No Hit
AAGTGCGTGCAGATTCAAGCTTAAGCCATGTCAATAAACGCATCTTGGTG17050.13772802874436466No Hit
AAGTGCGTGCAGATTCAAGCTTTCCTTTTATCACCTTTATTTTTTACCTT17000.13732413423191786No Hit
AAGTGCGTGCAGATTCAAGCTTAGTCCTCCGTTATACTAGTGGGAACAAT16830.13595089288959866No Hit
AAGTGCGTGCAGATTCAAGCTTGAAAGCAAGGCCTGTACTCCACTTGAAA16720.13506232496221568No Hit
AAGTGCGTGCAGATTCAAGCTTCTTGGATACCCTCTACACCATCCCAAGT16290.13158883215517303No Hit
AAGTGCGTGCAGATTCAAGCTTCCACTGCGAAAGCCATCACCACACACGA16240.13118493764272623No Hit
AAGTGCGTGCAGATTCAAGCTTTTAAGCATGTCAATAAACGCATCTTGGT16040.12956935959293894No Hit
AAGTGCGTGCAGATTCAAGCTTCTAGTGCCTGATGCTCTATTATTAGTTT15650.12641898239585378No Hit
AAGTGCGTGCAGATTCAAGCTTGCGAGAACCTCGCACAGGGTTGGTATTT15520.12536885666349207No Hit
AAGTGCGTGCAGATTCAAGCTTTTTTTTGCCTGTAATGTTTTATTTTAAA14950.12076445922159834No Hit
AAGTGCGTGCAGATTCAAGCTTGGGTACTCCTGGTCTAGTGCTCTTTCCT14660.1184218710494068No Hit
AAGTGCGTGCAGATTCAAGCTTTATAGATAAAAGAAGGGAAATGAACTCT14540.11745252421953443No Hit
AAGTGCGTGCAGATTCAAGCTTCATAAGTGAAGGAGAAATAAAATACTTT14470.1168870719021089No Hit
AAGTGCGTGCAGATTCAAGCTTTTTTTGTTTTGTTTTTGTATTGTTTTCT14420.11648317738966207No Hit
AAGTGCGTGCAGATTCAAGCTTCCTTGAGTTCTATACCTAACTACTCTTA14150.11430214702244927No Hit
AAGTGCGTGCAGATTCAAGCTTTTATCTTTTATTCAGGGAAGGAATTTAC14060.11357513690004499No Hit
AAGTGCGTGCAGATTCAAGCTTTCTAGAAGAATACATCCTATTTGAACTT13730.110909433117896No Hit
AAGTGCGTGCAGATTCAAGCTTAGGGTATAGGGACGCTAGTTCAGACTAA13670.11042475970295981No Hit
AAGTGCGTGCAGATTCAAGCTTGGTCACAGCATATAACAAGTGTCTAAAC13510.10913229726313No Hit
AAGTGCGTGCAGATTCAAGCTTTATGGGGACTGAGGAATTTCTGGCAACT13150.10622425677351292No Hit
AAGTGCGTGCAGATTCAAGCTTTTAGAAAACATCTCCTAGTAATTCCTAA13050.10541646774861928No Hit
AAGTGCGTGCAGATTCAAGCTTATTTTTTAGAAGACACAACATCAATAAA12830.1036393318938533No Hit
AAGTGCGTGCAGATTCAAGCTTTTGGCACACCAAATTTTGACCACCTTCT12740.10291232177144902No Hit
AAGTGCGTGCAGATTCAAGCTTCATCCAATACCAAGTTTTAGCACAAGTC12600.10178141713659793No Hit
AAGTGCGTGCAGATTCAAGCTTATAAACTGTATACCCTAAAGAGTGAATT12570.10153908042912985No Hit
AAGTGCGTGCAGATTCAAGCTTTAGAAACCAAGAGCTAAAGTTATTACAA12490.10089284920921494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)