FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000709942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000709942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8298469
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCC526279863.41890293257708No Hit
CCAGGCTAAGTCACAAGCTTCTGTTATAAGGTCTCATCACACCATATGCC370890.44693786287567017No Hit
CCAGGCTAAGTCACAAGCTTGATCTCCTTTGAAAAGAGCTCAGCTTAAAG369510.4452749055277546No Hit
CCAGGCTAAGTCACAAGCTTCTTTTCCTGCTCTTATTGCATGCTCAGGTA321960.38797517951805327No Hit
CCAGGCTAAGTCACAAGCTTTTGTTTTAAGGTCTCATCACACCATATGCC243230.2931022577779106No Hit
CCAGGCTAAGTCACAAGCTTCACAGAGGACACACCGAGGAGGCTGAATCT240200.28945098186183504No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGCCTCATCACACCATATGCC240070.2892943264594951No Hit
CCAGGCTAAGTCACAAGCTTCACAGAGGACACACCAAGGAGGCTGAATCT237960.2867516887753633No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCCCATCACACCATATGCC193250.23287428078601005No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATTAGGTCTCATCACACCATATGCC188920.22765645084653566No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCACCACACCATATGCC186940.22527046856474367No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACGCCATATGCC184340.22213736051794614No Hit
CCAGGCTAAGTCACAAGCTTAAGGGGCATAGCTGGACCCCTGCATATATG179250.2160036989955617No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATACGCC164410.19812088229768648No Hit
CCAGGCTAAGTCACAAGCTTTTGCTATAAGGTCTCATCACACCATATGCC163100.19654227785872308No Hit
CCAGGCTAAGTCACAAGCTTTCGTTATAAGGTCTCATCACACCATATGCC162610.19595180749605742No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAGGGTCTCATCACACCATATGCC161540.19466241303064458No Hit
CCAGGCTAAGTCACAAGCTTTGCCTAAGACAGACACACGCATGCTCAGGT160420.1933127664874087No Hit
CCAGGCTAAGTCACAAGCTTGTGAGATTCACCTTTCCTCGCTTTATATCT160200.19304765734498738No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCGCACCATATGCC158220.19066167506319537No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCGTCACACCATATGCC144070.17361033703927797No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGGCTCATCACACCATATGCC143100.1724414467295112No Hit
CCAGGCTAAGTCACAAGCTTTATTGAAGTATAATTGATATACAAAGACCT137720.16595832315575318No Hit
CCAGGCTAAGTCACAAGCTTCTGATTTGTACGTCAGGGGTGAAGTGCAGG130840.15766763724730432No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCGTATGCC130400.15713741896246164No Hit
CCAGGCTAAGTCACAAGCTTTTGTTGTAAGGTCTCATCACACCATATGCC126460.15238955523000688No Hit
CCAGGCTAAGTCACAAGCTTGGTATGGAGGAGGAACAGAAAAAATGCCAG125220.15089530369999576No Hit
CCAGGCTAAGTCACAAGCTTGGCTCTGTCATTTACTGGCCTCAAAATGTC118530.14283357568727437No Hit
CCAGGCTAAGTCACAAGCTTGCTTTTGTATATGTAAGGAACCACACAGAG118230.1424720632203362No Hit
CCAGGCTAAGTCACAAGCTTCATTCAATGTAAGGGTACTAGAAGTTCTAG114060.13744703992989551No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATGAGGTCTCATCACACCATATGCC112240.13525386429713723No Hit
CCAGGCTAAGTCACAAGCTTGCCAGTAGAAATAGTGACTCTCACATACTG105300.12689087589530068No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCACATGCC102850.12393852408197222No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATGTGCC101850.12273348252551163No Hit
CCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATAGGCC100980.12168509637139092No Hit
CCAGGCTAAGTCACAAGCTTTTGTCATAAGGTCTCATCACACCATATGCC98930.1192147611806467No Hit
CCAGGCTAAGTCACAAGCTTTTGTTACAAGGTCTCATCACACCATATGCC96490.11627445978288284No Hit
CCAGGCTAAGTCACAAGCTTATTGGAAAGCATTTAAGAACGTTAGAGCGT96000.11568398942021715No Hit
CCAGGCTAAGTCACAAGCTTGTAAGAAAAAGACAATAAACAATGTTGGCC95950.11562373734239412No Hit
CCAGGCTAAGTCACAAGCTTTGGATTTGAGTTTGTGTTTCCAAACACACT94030.11331005755398978No Hit
CCAGGCTAAGTCACAAGCTTTGAGCATCTGTAGTTTAAAAAACTTTCCAG92670.11167120103720338No Hit
CCAGGCTAAGTCACAAGCTTGAAAAATTTCATCTGAAAATGAATGTTTTG92660.11165915062163877No Hit
CCAGGCTAAGTCACAAGCTTTCATTTTAATAAAAGTGTCTCCTATTTTTT91970.11082767194768095No Hit
CCAGGCTAAGTCACAAGCTTCCCTAAACAGGGCTTGAGCTCTGGAAGGAG89260.10756200932967273No Hit
CCAGGCTAAGTCACAAGCTTTTTCCTCTAGGTACAGTGTTAGACAGTACA89010.1072607489405576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)