FastQCFastQC Report
Sun 11 Sep 2022
EGAF00000710443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000710443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3110727
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC212536768.32380340672776No Hit
CGAGGTTCTCGCAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC227230.7304723301016128No Hit
CGAGGTTCTCGCAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA169730.5456280798668607No Hit
CGAGGTTCTCGCAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT143970.4628178557616917No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGAATCCC130650.41999828335948475No Hit
CGAGGTTCTCGCAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC106310.341752908564461No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAGGACAAGGTATCCC95940.30841664986995004No Hit
CGAGGTTCTCGCAAGCTTCAGGAGTACAAAGCTAAAAGACAAGGTATCCC89640.28816414940944673No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGGCAAGGTATCCC89130.2865246612769298No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACGAAGCTAAAAGACAAGGTATCCC83250.2676223275137934No Hit
CGAGGTTCTCGCAAGCTTCAGGGATACAAAGCTAAAAGACAAGGTATCCC80920.26013211702601996No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACGAGGTATCCC80600.2591034185899309No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAGGGTATCCC80250.2579782796754585No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAGGCTAAAAGACAAGGTATCCC78540.2524811724076076No Hit
CGAGGTTCTCGCAAGCTTCGGGAATACAAAGCTAAAAGACAAGGTATCCC77010.24756270801005684No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAGAGCTAAAAGACAAGGTATCCC76030.24441231904953406No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAGAGACAAGGTATCCC75050.24126193008901137No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGCATCCC74700.24013679117453895No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTACCCC70370.2262172154612089No Hit
CGAGGTTCTCGCAAGCTTGTGCCACCATGCCCAGCCAATTTTGTGTGTGT68110.21895203275632993No Hit
CGAGGTTCTCGCAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG59800.19223802024414227No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAGAAGACAAGGTATCCC56060.18021510727235143No Hit
CGAGGTTCTCGCAAGCTTAAGGAATACAAAGCTAAAAGACAAGGTATCCC54360.17475014683062834No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTGAAAGACAAGGTATCCC47790.1536296820646749No Hit
CGAGGTTCTCGCAAGCTTCAGGAATGCAAAGCTAAAAGACAAGGTATCCC47700.15334036062952486No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTGTCCC46640.14993279705997986No Hit
CGAGGTTCTCGCAAGCTTCACGAATACAAAGCTAAAAGACAAGGTATCCC46580.1497399161032132No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCCAAAAGACAAGGTATCCC46080.148132574796824No Hit
CGAGGTTCTCGCAAGCTTACCTATTTTTAGGATCAATCAATGTGAGGAAT45440.14607517792464592No Hit
CGAGGTTCTCGCAAGCTTATCCACCAAGATCAATCAATGTGAGGAATGAC44750.14385704692182888No Hit
CGAGGTTCTCGCAAGCTTTCACCTCTTGTTAAAGCAGTAAATGGTCTTTG43630.14025660239551718No Hit
CGAGGTTCTCGCAAGCTTCAGGAACACAAAGCTAAAAGACAAGGTATCCC41200.13244492364646593No Hit
CGAGGTTCTCGCAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC39380.12659420129120943No Hit
CGAGGTTCTCGCAAGCTTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGG36940.11875037571603038No Hit
CGAGGTTCTCGCAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT33390.1073382524406674No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACAAAGCTAAAAGACAAGGGATCCC32410.10418786348014467No Hit
CGAGGTTCTCGCAAGCTTAGCGTTCCAATAACGGAACACTAGGCATAATG31380.10087674038898303No Hit
CGAGGTTCTCGCAAGCTTCAGGAATACTAAGCTAAAAGACAAGGTATCCC31120.10004092290966067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)