FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000710446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000710446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4239374
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGT197580746.606102693463704No Hit
CTTTCGCAGTGGAAGCTTACAAATTTCTAGGCAAAAAGCACACTTCAGGA400870.9455877212060083No Hit
CTTTCGCAGTGGAAGCTTCACAGTCTGGGGAGGTGAAAGGGAAGCAAACC198610.4684889797408769No Hit
CTTTCGCAGTGGAAGCTTTTCACATTTTTTATATCAAGAAATAAAGCAAG194340.4584167379429132No Hit
CTTTCGCAGTGGAAGCTTTCCTTTTATCACCTTTATTTTTTACCTTCCCT192360.4537462370623587No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGCCAGGAGT143960.3395784377599146No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCCATCTGCCTCAGCCTC134110.31634387529857005No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGC112940.2664072572978935No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCACCTGAGGTCAGGAGT107950.2546366515433647No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGGGGTCAGGAGT105920.24984820872138197No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCGGGAGT80690.1903347050767401No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGGGT78550.1852867899836155No Hit
CTTTCGCAGTGGAAGCTTTCCTTGCTCCAGAGTGAGACACTATCTCCATC76020.17931892774735136No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGGTCATCTGAGGTCAGGAGT75420.17790362445021363No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCACTGGACACCTGGCCA75130.1772195611899304No Hit
CTTTCGCAGTGGAAGCTTACAAGCAGAGAAGGAGCAGAGTGTCCGCAATC68520.16162763653312964No Hit
CTTTCGCAGTGGAAGCTTAATGATACGGCGAAACCTGTCTCTGCTTCGTA68170.16080204294313263No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGACCATCTGAGGTCAGGAGT66440.15672125176971885No Hit
CTTTCGCAGTGGAAGCTTACCTATTCTTAGGATCATCTGAGGTCAGGAGT65660.15488135748343979No Hit
CTTTCGCAGTGGAAGCTTATCCACCAAGATCATCTGAGGTCAGGAGTTCA63550.14990420755517206No Hit
CTTTCGCAGTGGAAGCTTACCTATCTTTAGGATCATCTGAGGTCAGGAGT62370.14712077773746784No Hit
CTTTCGCAGTGGAAGCTTACCTACTTTTAGGATCATCTGAGGTCAGGAGT61980.1462008305943283No Hit
CTTTCGCAGTGGAAGCTTGCTCCAAATCATAGACACTGGTAGGTTAAACA59950.14141238777234563No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCCGAGGTCAGGAGT58410.1377797759763588No Hit
CTTTCGCAGTGGAAGCTTGTTGTTTGTTTGTTTGATTCAGATGGGGGAAG57460.13553887908922402No Hit
CTTTCGCAGTGGAAGCTTGTGGCCAAATGTAGACAAATTTTATGCATTAT57350.1352794068180821No Hit
CTTTCGCAGTGGAAGCTTCTAGAAATAATAAGTGAGTTTAGCAAGTTAAC56630.1335810428615168No Hit
CTTTCGCAGTGGAAGCTTGTGGGGGTTATATCCTACTGCTCAAGGTCATC56390.13301492154266173No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCGTCTGAGGTCAGGAGT56380.1329913331543761No Hit
CTTTCGCAGTGGAAGCTTTTGTAGATGCCTTAAAGTTTTGTATGTAGACA55540.13100990853838326No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTAGGATCATCTGAGGTCAGGAGTT52930.1248533391958341No Hit
CTTTCGCAGTGGAAGCTTCCTATGATTTCTTCTAATAGTTAAAATTCTAT52620.1241220991589796No Hit
CTTTCGCAGTGGAAGCTTCAAAAATGCATAGAATTATGTAACCATTTCCA52350.12348521267526763No Hit
CTTTCGCAGTGGAAGCTTTAATTTCTTACTGCTCTCTTGTGGCCATTCAA52110.12291909135641252No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGTCAGGAGA50280.11860241630014244No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTGGGATCATCTGAGGTCAGGAGT50250.11853165113528553No Hit
CTTTCGCAGTGGAAGCTTCAGGAATACAAAGCTAAAAGACAAGGTATCCC47350.11169101853245314No Hit
CTTTCGCAGTGGAAGCTTACCTATTTCTAGGATCATCTGAGGTCAGGAGT46710.11018136168217288No Hit
CTTTCGCAGTGGAAGCTTAGTTTGGCTGGATATGAAATTCTGGGTTGAAA45790.10801122995989502No Hit
CTTTCGCAGTGGAAGCTTGCCTATTTTTAGGATCATCTGAGGTCAGGAGT44620.10525138853047643No Hit
CTTTCGCAGTGGAAGCTTACCTATTTTTAGGATCATCTGAGGACAGGAGT44590.10518062336561955No Hit
CTTTCGCAGTGGAAGCTTTACAGAACCATCTCCACCCCCACTCCTACCCA44050.10390685039819558No Hit
CTTTCGCAGTGGAAGCTTACCCATTTTTAGGATCATCTGAGGTCAGGAGT43090.1016423651227752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)