FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000718624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000718624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30019624
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATAC555070.18490238252151325No Hit
GTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAAAA509500.16972231231144No Hit
CAAAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAGCCGG486120.16193407352470504No Hit
CCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCTCCT381100.12695029091636859No Hit
CTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGATTTC378780.12617746311546074No Hit
CTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTG374860.12487165062427164No Hit
GGAAGATGAAGACAGATGGTGCAGCCACAGTTCGTTTCATCTCCAGTCGTG360230.11999817186251233No Hit
CTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACGGACTTCACTC342800.11419196989276081No Hit
GCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGAAGTCCGTCCCA311530.10377545035207636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)