FastQCFastQC Report
Thu 9 May 2024
EGAF00000718625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000718625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48592101
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCA612340.126016366322584No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTA591670.12176258853265061TruSeq Adapter, Index 20 (97% over 44bp)

[OK]Adapter Content

Adapter graph