FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000727352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000727352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16401767
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATG3361522.0494864973999447TruSeq Adapter, Index 10 (100% over 49bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC1047310.6385348602988934TruSeq Adapter, Index 10 (100% over 50bp)
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC187830.11451814917258611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)