FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000728688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000728688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19061919
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC543250.28499229274869964TruSeq Adapter, Index 8 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG429110.22511374641766133TruSeq Adapter, Index 8 (100% over 49bp)

[OK]Adapter Content

Adapter graph