FastQCFastQC Report
Thu 9 Feb 2023
EGAF00000764690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000764690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75869506
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1080620.14243140056823358No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG829550.10933905382222997No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA787270.10376632740959195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)