FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000764930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000764930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92695098
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1673800.18057049791349267No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1353830.14605195195974657No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1001300.10802081464976712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)