FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000764946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000764946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85573858
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1389660.1623930523267982No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1147410.1340841732296328No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1003240.1172367383506304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)