FastQCFastQC Report
Mon 6 Feb 2023
EGAF00000764951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000764951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107443251
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2672090.24869779861743016No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA1556750.1448904408151239No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1293910.12042729421878717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)