FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000768873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000768873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39528336
Sequences flagged as poor quality0
Sequence length42
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATC599403715.163899133016882TruSeq Adapter, Index 2 (100% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)