FastQCFastQC Report
Thu 23 Feb 2023
EGAF00000769134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000769134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104684890
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1921300.18353173987191465No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1211010.11568145125815196No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1199470.1145790954167311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)