FastQCFastQC Report
Wed 15 Feb 2023
EGAF00000771876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000771876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108800517
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC1407510.12936611321433333No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA1397600.12845527195426837No Hit
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT1310380.12043876592976116No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG1306230.12005733391873495No Hit
GAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTC1160180.10663368447045155No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT1140290.10480556815736454No Hit
CCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACT1134640.10428626915440116No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1122730.10319160523841996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)