FastQCFastQC Report
Fri 17 Mar 2023
EGAF00000772002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000772002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56623500
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1028360.181613640979452No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA923790.16314604360380408No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT700960.12379312476268688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)