FastQCFastQC Report
Fri 30 Dec 2022
EGAF00000772152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000772152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178015559
Sequences flagged as poor quality0
Sequence length100
%GC23

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC33710141.8936625646300949TruSeq Adapter, Index 2 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG10540560.5921145353367679TruSeq Adapter, Index 2 (100% over 49bp)

[OK]Adapter Content

Adapter graph