FastQCFastQC Report
Fri 24 Feb 2023
EGAF00000772287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000772287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70065378
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT985000.1405829852227444No Hit
CCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACT850530.12139091007258963No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC835740.11928002443660549No Hit
CTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGT758800.10829885196651619No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG754570.10769513011119414No Hit
TGAAAAACTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTT743720.10614657641610098No Hit
GGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGT725500.10354614799908737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)