FastQCFastQC Report
Mon 13 May 2024
EGAF00000772908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000772908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53079129
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1059460.19960011024295443No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT668040.1258573779535832No Hit
GTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTC579190.10911821857513902No Hit
CTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTT557480.10502809870900481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)