FastQCFastQC Report
Sun 5 Mar 2023
EGAF00000772996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000772996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53984257
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA868210.16082651651573163No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT673990.12484936117579612No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC637410.11807331163231531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)