FastQCFastQC Report
Sun 5 Mar 2023
EGAF00000773049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000773049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53647654
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA690190.12865241041108713No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA628770.11720363391845615No Hit
CCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTA548340.10221136603662109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)