FastQCFastQC Report
Fri 24 May 2024
EGAF00000773237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000773237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76178402
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAA1285000.16868298182469094No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA1276910.16762100102861177No Hit
CCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTA1006380.13210831069940268No Hit
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG762700.10012024143011032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)